Visualization Data Mining Analysis Suite Custom Motif Gene selection Accessions Use entire genome Use a subset Get a subset with Expression Angler and/or Transcription Factors 14BPATERD1 AAGACGTAGATACL12 ABFs binding site motif ABRE binding site motif ABRE-like binding site motif ABREATRD22 ACE promoter motif ACGTABREMOTIFA2OSEM AG binding site motif AG BS in AP3 AGATCONSENSUS AGCBOXNPGLB AGL1ATCONSENSUS AGL2ATCONSENSUS AGL3 binding site motif AP1 BS in AP3 AP1/AG BS in SUP ARF binding site motif ATHB1 binding site motif ATHB2 binding site motif ATHB2ATCONSENSUS ATHB5ATCORE ATHB6 binding site motif AtMYB2 BS in RD22 AtMYC2 BS in RD22 BoxII promoter motif CACGTGMOTIF CArG promoter motif CArG1 motif in AP3 CARG1ATAP3 CArG2 motif in AP3 CARG2ATAP3 CArG3 motif in AP3 CARG3ATAP3 CARGCW8GAT CBF1 BS in cor15a CCA1 binding site motif CCA1 motif1 BS in CAB1 CCA1 motif2 BS in CAB1 CDA1ATCAB2 CGF1ATCAB2 DRE core motif DREB1A/CBF3 E2F binding site motif E2F/DP BS in AtCDC6 E2FAT EIL1/2/3 BS in ERF1 EIN3 BS in ERF1 EIN3ATERF1 ERE promoter motif ERF1 BS in AtCHI-B EveningElement promoter motif GADOWNAT Gap-box Motif GAREAT GATA Motif GBF1/2/3 BS in ADH1 GBOXLERBCS GCC-box promoter motif Hexamer promoter motif HY5AT Ibox promoter motif IDRSZMFER1 JASE1 motif in OPR1 JASE2 motif in OPR1 L1-box promoter motif LEAFYATAG LREBOX2PSRBCS3 LS5/E2F-varient binding site motif LS7 promoter element LTRE promoter motif MRE motif in CHS MYB binding site promoter MYB1 binding site motif MYB1AT MYB1LEPR MYB2 binding site motif MYB2AT MYB3 binding site motif MYB4 binding site motif MYCATERD1 Nonamer promoter motif OBF4-5 BS in GST6 OBF5ATGST6 OBP-1,4,5 BS in GST6 OCSELEMENTAT octamer promoter motif PI promoter motif PIIATGAPB PRHA BS in PAL1 RAV1-B binding site motif RY-repeat promoter motif SV40 core promoter motif T-box promoter motif TATA-box Motif TEF-box promoter motif TEF1BOXATA1 TELO-box promoter motif TGA1 binding site motif UPRE1AT UPRE2AT UPRMOTIFIAT UPRMOTIFIIAT W-box promoter motif Z-box promoter motif Selected TFs Motif Positions and/or Gene Ontology All biological process unknown cell organization and biogenesis cell wall cellular component unknown chloroplast cytosol developmental processes dna or rna binding dna or rna metabolism electron transport or energy pathways er extracellular golgi apparatus hydrolase activity kinase activity mitochondria molecular function unknown nucleic acid binding nucleotide binding nucleus other binding other biological processes other cellular components other cellular processes other cytoplasmic components other enzyme activity other intracellular components other membranes other metabolic processes other molecular functions other physiological processes plasma membrane plastid protein binding protein metabolism receptor binding or activity response to abiotic or biotic stimulus response to stress ribosome signal transduction structural molecule activity transcription transcription factor activity transferase activity transport transporter activity Selected Terms Options Range Selection 250 500 750 1000 1500 2000 2500 3000 Max bp upstream Cutoff at adjacent genes Display 1x 2x 4x 8x Magnification CpG islands P-value cutoffs TF cutoff GO cutoff Updated: 1996: PM, 28 Feb 2005 © 2005 Timothy Ryan O'Connor. All rights reserved Contact: John Wyrick 675 Fulmer Hall Help Pullman, WA 99164 Recommended Browser: Mozilla Firefox Reference Publication